Prob

Submodules

• Prob.AnimatedHistogram
  • AnimatedHistogram
    • AnimatedHistogram.animate()
    • AnimatedHistogram.prepare()
    • AnimatedHistogram.reset()
  • demo()
  • demo_()
• Prob.ApproxGmmUtils
• Prob.ClusteringUtils
  • spike_demo()
• Prob.ConvolutionByDice
  • create_vertices()
  • demo()
  • demo3d()
• Prob.DenoiseFigures
  • DenoiseFigures
    • DenoiseFigures.body()
    • DenoiseFigures.draw_figures()
    • DenoiseFigures.show()
• Prob.DiscretePdf
  • DiscretePdf
    • DiscretePdf.animate()
    • DiscretePdf.get_nth_bar_vertices()
    • DiscretePdf.prepare()
    • DiscretePdf.reset()
  • demo()
• Prob.DualEghMixture
  • DualEghMixture
    • DualEghMixture.fit()
    • DualEghMixture.get_bins()
    • DualEghMixture.get_sub()
    • DualEghMixture.unified_fit()
• Prob.DualEghMixtureUtils
  • SpikeDialog
    • SpikeDialog.body()
    • SpikeDialog.buttonbox()
    • SpikeDialog.draw_next()
    • SpikeDialog.generate_samle()
    • SpikeDialog.iterate()
    • SpikeDialog.show()
  • animate_gmm_elution()
  • get_anim_components()
  • get_components()
  • get_gmm()
  • plot_components()
  • plot_gmm_elution()
  • set_consistent_base()
  • spike_demo()
  • spike_dialog()
• Prob.EghBySampling
  • EghSampler
  • moments_proof()
• Prob.EghMixture
  • EghMixture
    • EghMixture.fit()
    • EghMixture.get_anim_C()
    • EghMixture.get_anim_components()
    • EghMixture.get_peak_mean_x()
    • EghMixture.guess_initial_params()
    • EghMixture.initilize()
    • EghMixture.model_name
    • EghMixture.moderate_sigmas()
    • EghMixture.set_anim_params()
    • EghMixture.solve_params()
    • EghMixture.update_params()
  • e0
  • egh()
  • egh_pdf()
  • get_curves()
  • get_sorted_params()
• Prob.EghMixture-try
• Prob.EghMixture-try2
• Prob.EghMixtureUtils
  • SpikeDialog
    • SpikeDialog.body()
    • SpikeDialog.buttonbox()
    • SpikeDialog.draw_next()
    • SpikeDialog.generate_samle()
    • SpikeDialog.iterate()
    • SpikeDialog.show()
  • animate_gmm_elution()
  • gaussian()
  • get_anim_components()
  • get_components()
  • get_gmm()
  • plot_components()
  • plot_gmm_elution()
  • set_consistent_base()
  • spike_demo()
  • spike_dialog()
• Prob.EghMixtureUtils-old
• Prob.EmgBySampling
  • EmgBySampling
    • EmgBySampling.play()
    • EmgBySampling.plot_data()
    • EmgBySampling.save()
  • moments_proof()
• Prob.EmgEstimation
  • spike()
• Prob.EmgMixture
  • EmgMixture
    • EmgMixture.fit()
    • EmgMixture.get_anim_C()
    • EmgMixture.get_anim_components()
    • EmgMixture.get_peak_mean_x()
    • EmgMixture.guess_initial_params()
    • EmgMixture.initilize()
    • EmgMixture.model_name
    • EmgMixture.moderate_sigmas()
    • EmgMixture.set_anim_params()
    • EmgMixture.solve_params()
    • EmgMixture.update_params()
  • emg_pdf()
  • get_curves()
  • get_sorted_params()
• Prob.EmgMixtureUtils
  • SpikeDialog
    • SpikeDialog.body()
    • SpikeDialog.buttonbox()
    • SpikeDialog.draw_next()
    • SpikeDialog.generate_samle()
    • SpikeDialog.iterate()
    • SpikeDialog.show()
  • animate_gmm_elution()
  • gaussian()
  • get_anim_components()
  • get_components()
  • get_gmm()
  • plot_components()
  • plot_gmm_elution()
  • set_consistent_base()
  • spike_demo()
  • spike_dialog()
• Prob.GammaVisualizer
  • GammaVisualizer
    • GammaVisualizer.draw_gamma_3d()
    • GammaVisualizer.show()
• Prob.GaussianMixture
  • debug_plot_gmm()
  • gaussian_pdf()
  • get_curves()
  • get_sorted_params()
  • gm_curve()
  • hist_to_source()
• Prob.GroupingMatrix
  • GroupingMatrix
    • GroupingMatrix.click()
    • GroupingMatrix.get_matrix()
    • GroupingMatrix.on_cell_click()
    • GroupingMatrix.reset()
    • GroupingMatrix.set_default_grouping()
  • get_font_size()
  • num_to_char()
• Prob.GssMixture
  • GssMixture
    • GssMixture.calculate_mean_covariance()
    • GssMixture.fit()
    • GssMixture.guess_initial_params()
    • GssMixture.initilize()
    • GssMixture.moderate_sigmas()
    • GssMixture.set_anim_params()
    • GssMixture.solve_params()
• Prob.GssMixtureUtils
  • animate_gmm_elution()
  • gaussian()
  • get_anim_components()
  • get_components()
  • get_gmm()
  • plot_components()
  • plot_gmm_elution()
  • set_consistent_base()
  • spike_demo()
• Prob.KL_Divergence
  • synchronize()
• Prob.MixedElutionModel
  • MixedElutionModel
  • guess_n_components()
  • spike_demo()
• Prob.MmAnimator
  • MmAnimator
    • MmAnimator.animate()
    • MmAnimator.pause()
    • MmAnimator.prepare()
    • MmAnimator.reset()
    • MmAnimator.save()
    • MmAnimator.start()
    • MmAnimator.step()
    • MmAnimator.stop()
• Prob.PairedDataSets
  • E11nInfo
  • PairedDataSets
    • PairedDataSets.draw_exprapolated()
    • PairedDataSets.generate_sample_datasets()
    • PairedDataSets.get_i_pos_values()
    • PairedDataSets.guess_denoise_rank()
    • PairedDataSets.guess_denoise_rank_try()
    • PairedDataSets.update_exprapolated()
  • get_cut_num_peaks()
  • get_denoise_rank_impl()
  • get_num_components()
• Prob.ProbData
  • ProbData
    • ProbData.get_approx_peak_range()
    • ProbData.proof_plot()
• Prob.ProbDataUtils
  • generate_samle_datasets()
  • generate_sample_data()
  • generate_sample_data_impl()
  • plot_hist_data()
  • set_consistent_base()
• Prob.ProbDensity
  • ProbDensity
    • ProbDensity.get_approx_peak_range()
    • ProbDensity.proof_plot()
• Prob.ProbDensityUtils
  • generate_samle_datasets()
  • generate_sample_data()
  • generate_sample_data_impl()
  • plot_hist_data()
  • plot_hist_data_list()
  • set_consistent_base()
• Prob.Qmm3dFigure
  • Qmm3dFigure
    • Qmm3dFigure.body()
    • Qmm3dFigure.draw_whole()
    • Qmm3dFigure.draw_zoomed()
    • Qmm3dFigure.find_where_to_zoom()
    • Qmm3dFigure.show()
  • find_where_to_zoom_impl()
• Prob.QmmController
• Prob.QmmDenssMenu
  • QmmDenssMenu
    • QmmDenssMenu.config()
    • QmmDenssMenu.prepare_data_for_denss()
    • QmmDenssMenu.show_denss_gui()
    • QmmDenssMenu.show_denss_manager()
    • QmmDenssMenu.show_ed_viewer()
    • QmmDenssMenu.show_saxs_simulator()
    • QmmDenssMenu.submit_all()
• Prob.QmmDialog
• Prob.QmmMenu
  • App
    • App.body()
    • App.get_it_ready_for_qmm()
  • MockAnalyzer
  • MockCurve
    • MockCurve.get_major_peak_info()
  • MockSd
    • MockSd.get_xray_curve()
  • QmmMenu
    • QmmMenu.config()
    • QmmMenu.prepare_denoise_rank()
    • QmmMenu.show_egh_qmm_dialog()
    • QmmMenu.show_emg_qmm_dialog()
    • QmmMenu.show_qmm_dialog()
    • QmmMenu.show_qmm_options_dialog()
    • QmmMenu.show_qmm_window_setting_dialog()
• Prob.QmmOptions
  • QmmOptionsDialog
    • QmmOptionsDialog.apply()
    • QmmOptionsDialog.auto_denoise_rank_tracer()
    • QmmOptionsDialog.auto_n_components_tracer()
    • QmmOptionsDialog.body()
    • QmmOptionsDialog.random_seed_fix_tracer()
    • QmmOptionsDialog.show()
    • QmmOptionsDialog.validate()
• Prob.QmmResultSaver
  • QmmResultSaverDialog
    • QmmResultSaverDialog.adjust_geometry()
    • QmmResultSaverDialog.body()
    • QmmResultSaverDialog.buttonbox()
    • QmmResultSaverDialog.save_data()
    • QmmResultSaverDialog.show()
    • QmmResultSaverDialog.validate()
• Prob.QmmWindowSetting
  • QmmWindowSetting
    • QmmWindowSetting.apply()
    • QmmWindowSetting.body()
    • QmmWindowSetting.build_figure()
    • QmmWindowSetting.build_manipulation_parts()
    • QmmWindowSetting.clear_window()
    • QmmWindowSetting.draw_window()
    • QmmWindowSetting.onselect()
    • QmmWindowSetting.set_uv_window()
    • QmmWindowSetting.show()
    • QmmWindowSetting.spinbox_tracer()
• Prob.QuadEghMixtureUtils
  • SpikeDialog
    • SpikeDialog.body()
    • SpikeDialog.buttonbox()
    • SpikeDialog.create_animator()
    • SpikeDialog.create_canvas()
    • SpikeDialog.do_step()
    • SpikeDialog.draw_next()
    • SpikeDialog.iterate()
    • SpikeDialog.save_animation()
    • SpikeDialog.show()
    • SpikeDialog.show_animation()
    • SpikeDialog.start_step_mode()
    • SpikeDialog.toggle_animation()
  • animate_gmm_elution()
  • get_anim_components()
  • get_components()
  • plot_components()
  • plot_decompositions()
  • set_consistent_base()
  • spike_dialog()
• Prob.QuadEmgMixtureUtils
  • SpikeDialog
    • SpikeDialog.body()
    • SpikeDialog.buttonbox()
    • SpikeDialog.create_animator()
    • SpikeDialog.create_canvas()
    • SpikeDialog.do_step()
    • SpikeDialog.draw_next()
    • SpikeDialog.iterate()
    • SpikeDialog.save_animation()
    • SpikeDialog.show()
    • SpikeDialog.show_animation()
    • SpikeDialog.start_step_mode()
    • SpikeDialog.toggle_animation()
  • animate_gmm_elution()
  • get_anim_components()
  • get_components()
  • plot_components()
  • plot_decompositions()
  • set_consistent_base()
  • spike_dialog()
• Prob.QuadMM
  • QuadMM
    • QuadMM.get_bins()
    • QuadMM.get_model_name()
    • QuadMM.get_sub()
    • QuadMM.separate_fit()
    • QuadMM.set_subs()
    • QuadMM.unified_fit()
• Prob.QuadMmUtils
  • SpikeDialog
    • SpikeDialog.body()
    • SpikeDialog.buttonbox()
    • SpikeDialog.create_animator()
    • SpikeDialog.create_canvas()
    • SpikeDialog.do_step()
    • SpikeDialog.draw_next()
    • SpikeDialog.iterate()
    • SpikeDialog.save_animation()
    • SpikeDialog.show()
    • SpikeDialog.show_animation()
    • SpikeDialog.start_step_mode()
    • SpikeDialog.toggle_animation()
  • animate_gmm_elution()
  • get_anim_components()
  • get_components()
  • plot_components()
  • plot_decompositions()
  • set_consistent_base()
  • spike_dialog()
• Prob.SklMixtureUtils
  • animate_gmm_elution()
  • gaussian()
  • get_anim_components()
  • get_components()
  • get_gmm()
  • plot_components()
  • plot_gmm_elution()
  • set_consistent_base()
  • spike_demo()
• Prob.SmbMixture
  • SmbMixture
    • SmbMixture.calculate_mean_covariance()
    • SmbMixture.fit()
    • SmbMixture.guess_initial_params()
    • SmbMixture.initilize()
    • SmbMixture.moderate_sigmas()
    • SmbMixture.solve_params()
  • smb_pdf()
• Prob.SmbMixtureUtils
  • gaussian()
  • get_components()
  • get_gmm()
  • plot_components()
  • plot_gmm_elution()
  • set_consistent_base()
  • spike_demo()
• Prob.gmm_dphem_learn
  • gmm_dphem_learn()
• Prob.itsample
  • adaptive_chebfit()
  • chebcdf()
  • get_cdf()
  • normalize()
  • sample()
• Prob.pylib_dphem
  • E_step()
  • M_step()
  • do_split()
  • draw_ellipse()
  • gcentroids()
  • genergy()
  • gmm_ll()
  • gmm_plot1d()
  • inv_chol()
  • logComponent()
  • logdet_chol()
  • logsumexp()
  • logtrick2()
  • my_weighted_kmeans()
  • plot_gmm()
  • solve_chol()