Mapping

Submodules

• Mapping.CurveSimilarity
  • CurveSimilarity
    • CurveSimilarity.compute_rough_mapping_score()
    • CurveSimilarity.compute_similarity_at()
    • CurveSimilarity.compute_similarity_impl()
    • CurveSimilarity.compute_whole_similarity()
    • CurveSimilarity.get_extended_x()
    • CurveSimilarity.get_mapped_info()
    • CurveSimilarity.get_uniformly_mapped_a_curve()
    • CurveSimilarity.inverse_int_value()
    • CurveSimilarity.mapped_int_value()
    • CurveSimilarity.mapped_value()
    • CurveSimilarity.plot_the_mapped_state()
    • CurveSimilarity.try_improve_mapping()
  • RegressInfo
  • compute_chi_square()
  • compute_similarlity_factors()
• Mapping.ElutionMapper
  • ElutionMapper
    • ElutionMapper.adjust_baselines()
    • ElutionMapper.adjust_both_baselines()
    • ElutionMapper.adjust_both_opt_results()
    • ElutionMapper.adjust_uv_baseline_only()
    • ElutionMapper.adjust_uv_opt_results()
    • ElutionMapper.adjust_xray_baseline_only()
    • ElutionMapper.adjust_xray_opt_results()
    • ElutionMapper.both_baseline_adjuster()
    • ElutionMapper.check_mapping_normality()
    • ElutionMapper.check_peak_concictency()
    • ElutionMapper.compute_approximate_std_diff()
    • ElutionMapper.compute_area()
    • ElutionMapper.compute_curve_for_eval_diff()
    • ElutionMapper.compute_deviation_scales()
    • ElutionMapper.compute_initial_params()
    • ElutionMapper.compute_penalty_vector()
    • ElutionMapper.compute_simple_params()
    • ElutionMapper.compute_std_diff()
    • ElutionMapper.compute_xray_baseline()
    • ElutionMapper.debug_log_results()
    • ElutionMapper.determine_mapping_ranges()
    • ElutionMapper.ensure_peak_consistency()
    • ElutionMapper.get_adjusted_a_spline()
    • ElutionMapper.get_adjustment_deviation()
    • ElutionMapper.get_affine_info()
    • ElutionMapper.get_conc_type()
    • ElutionMapper.get_conc_vector()
    • ElutionMapper.get_int_ranges()
    • ElutionMapper.get_mapped_flow_changes()
    • ElutionMapper.get_mapped_info()
    • ElutionMapper.get_min_sci()
    • ElutionMapper.get_num_peaks()
    • ElutionMapper.get_opt_params_from_ue()
    • ElutionMapper.get_opt_params_from_xe()
    • ElutionMapper.get_sci_list()
    • ElutionMapper.get_uniformly_scaled_vector()
    • ElutionMapper.get_uv_value()
    • ElutionMapper.get_x2a_scale()
    • ElutionMapper.initialize()
    • ElutionMapper.make_a_curve()
    • ElutionMapper.make_elution_curves()
    • ElutionMapper.make_mapped_adjustment()
    • ElutionMapper.make_mapped_valley_vector()
    • ElutionMapper.make_mapped_vector()
    • ElutionMapper.make_proof_info()
    • ElutionMapper.make_scaled_xray_curve_y()
    • ElutionMapper.make_uniformly_scaled_vector()
    • ElutionMapper.make_uniformly_scaled_vector_in_another_way()
    • ElutionMapper.make_whole_mapped_vector()
    • ElutionMapper.make_x_curve()
    • ElutionMapper.optimize()
    • ElutionMapper.optimize_mapping()
    • ElutionMapper.prepare_env_for_plain_LPM()
    • ElutionMapper.refine_mapping_ranges()
    • ElutionMapper.resort_to_simpler_solution()
    • ElutionMapper.set_opt_params()
    • ElutionMapper.set_optimize_callback()
    • ElutionMapper.set_peak_eval_ranges()
    • ElutionMapper.set_sd_update_callback()
    • ElutionMapper.set_x_curve_update_callback()
    • ElutionMapper.uv_baseline_adjuster()
    • ElutionMapper.xray_baseline_adjuster()
  • TO_BE_REMOVED
• Mapping.ElutionMapperAdjuster
  • ElutionMapperAdjuster
    • ElutionMapperAdjuster.baseline_adjust_tracer()
    • ElutionMapperAdjuster.blink_start_tracer()
    • ElutionMapperAdjuster.bpa_right_button()
    • ElutionMapperAdjuster.build_mapping_precision_measure_widgets()
    • ElutionMapperAdjuster.build_optimize_button()
    • ElutionMapperAdjuster.build_other_buttons()
    • ElutionMapperAdjuster.build_penalty_widgets()
    • ElutionMapperAdjuster.build_uv_absorbance_option_widgets()
    • ElutionMapperAdjuster.build_uv_absorbance_option_widgets_dummy()
    • ElutionMapperAdjuster.build_xray_scattering_option_widgets()
    • ElutionMapperAdjuster.change_cursor()
    • ElutionMapperAdjuster.close_fig()
    • ElutionMapperAdjuster.deviation_ratio_tracer()
    • ElutionMapperAdjuster.get_conc_type()
    • ElutionMapperAdjuster.get_mapping_params()
    • ElutionMapperAdjuster.get_uv_base_const_state()
    • ElutionMapperAdjuster.get_xray_base_const_state()
    • ElutionMapperAdjuster.get_xray_base_degree()
    • ElutionMapperAdjuster.lpm_right_button()
    • ElutionMapperAdjuster.optimize()
    • ElutionMapperAdjuster.optimize_impl()
    • ElutionMapperAdjuster.set_uv_lpm_option()
    • ElutionMapperAdjuster.set_xr_bpa_option()
    • ElutionMapperAdjuster.show_animation()
    • ElutionMapperAdjuster.show_manual_adjuster()
    • ElutionMapperAdjuster.start_blink()
    • ElutionMapperAdjuster.stop_blink()
    • ElutionMapperAdjuster.sync_options_tracer()
    • ElutionMapperAdjuster.update_mapping_precision_measure()
    • ElutionMapperAdjuster.update_proportional_uv_curve()
    • ElutionMapperAdjuster.uv_baseline_opt_tracer()
    • ElutionMapperAdjuster.xray_baseline_opt_tracer()
• Mapping.ElutionMapperAnimator
  • ElutionMapperAnimation
    • ElutionMapperAnimation.body()
    • ElutionMapperAnimation.show()
    • ElutionMapperAnimation.update_plotter()
  • ElutionMapperAnimator
    • ElutionMapperAnimator.show()
    • ElutionMapperAnimator.update()
• Mapping.ElutionMapperCanvas
  • ElutionMapperCanvas
    • ElutionMapperCanvas.apply()
    • ElutionMapperCanvas.auto_navigate_no_decomp()
    • ElutionMapperCanvas.auto_navigate_to_decomp_editor()
    • ElutionMapperCanvas.body()
    • ElutionMapperCanvas.buttonbox()
    • ElutionMapperCanvas.cancel()
    • ElutionMapperCanvas.change_depedent_states()
    • ElutionMapperCanvas.control_gui_automatically()
    • ElutionMapperCanvas.debug_sd()
    • ElutionMapperCanvas.decomp_editor_state()
    • ElutionMapperCanvas.do_devel_test()
    • ElutionMapperCanvas.draw()
    • ElutionMapperCanvas.draw_mapped()
    • ElutionMapperCanvas.get_canvas_width()
    • ElutionMapperCanvas.get_cd_colors()
    • ElutionMapperCanvas.get_cursor_widgets()
    • ElutionMapperCanvas.get_edit_mode()
    • ElutionMapperCanvas.get_guide_info()
    • ElutionMapperCanvas.get_helper_info()
    • ElutionMapperCanvas.get_range_info()
    • ElutionMapperCanvas.get_sd()
    • ElutionMapperCanvas.get_toggle_text()
    • ElutionMapperCanvas.get_toggled_mode()
    • ElutionMapperCanvas.get_xray_correction_necessity()
    • ElutionMapperCanvas.has_decomp_editor()
    • ElutionMapperCanvas.investigate_correction()
    • ElutionMapperCanvas.monitor_control_thread()
    • ElutionMapperCanvas.ok_debug()
    • ElutionMapperCanvas.set_adjust_frame()
    • ElutionMapperCanvas.set_basic_buttons()
    • ElutionMapperCanvas.show()
    • ElutionMapperCanvas.show_absorbance_figure()
    • ElutionMapperCanvas.show_absorbance_viewer()
    • ElutionMapperCanvas.show_curve()
    • ElutionMapperCanvas.show_decomp_editor()
    • ElutionMapperCanvas.show_range_editor_dialog()
    • ElutionMapperCanvas.show_scattering_figure()
    • ElutionMapperCanvas.show_threedim_dialog()
    • ElutionMapperCanvas.start_full_automatic_control()
    • ElutionMapperCanvas.start_full_automatic_control_impl()
    • ElutionMapperCanvas.toggle_mode()
    • ElutionMapperCanvas.try_image_save()
    • ElutionMapperCanvas.update_button_colors()
    • ElutionMapperCanvas.update_guide_info()
    • ElutionMapperCanvas.update_guide_message()
    • ElutionMapperCanvas.update_helper_info()
    • ElutionMapperCanvas.update_params()
    • ElutionMapperCanvas.update_params_for_data_correction()
    • ElutionMapperCanvas.update_range_info()
    • ElutionMapperCanvas.validate()
• Mapping.ElutionMapperPlotter
  • ElutionMapperPlotter
    • ElutionMapperPlotter.add_adjust_polygon()
    • ElutionMapperPlotter.add_range_patches()
    • ElutionMapperPlotter.close_fig()
    • ElutionMapperPlotter.create_popup_menu()
    • ElutionMapperPlotter.draw()
    • ElutionMapperPlotter.draw_fig1()
    • ElutionMapperPlotter.draw_fig2()
    • ElutionMapperPlotter.draw_mapped()
    • ElutionMapperPlotter.draw_ranges_impl()
    • ElutionMapperPlotter.get_baseline_color()
    • ElutionMapperPlotter.get_canvas_width()
    • ElutionMapperPlotter.get_draw_params()
    • ElutionMapperPlotter.get_figsize()
    • ElutionMapperPlotter.get_target_ranges()
    • ElutionMapperPlotter.on_mpl_button_press()
    • ElutionMapperPlotter.plot_difference()
    • ElutionMapperPlotter.save_the_curves()
    • ElutionMapperPlotter.save_the_figure()
    • ElutionMapperPlotter.set_range_info()
    • ElutionMapperPlotter.show()
    • ElutionMapperPlotter.show_cdi_dialog()
    • ElutionMapperPlotter.show_hide_difference()
    • ElutionMapperPlotter.update_show_diff_btn_state()
• Mapping.FewerPointMapper
  • FewerPointMapper
    • FewerPointMapper.get_params()
    • FewerPointMapper.get_scale_mapped_y()
    • FewerPointMapper.get_simply_mapped_y()
  • demo()
• Mapping.ManualAdjuster
  • ManualAdjuster
    • ManualAdjuster.apply()
    • ManualAdjuster.body()
    • ManualAdjuster.build_manip_panel()
    • ManualAdjuster.draw_figures()
    • ManualAdjuster.reset()
    • ManualAdjuster.reset_to_the_init_params()
    • ManualAdjuster.show()
    • ManualAdjuster.time_params_tracer()
  • single_float()
• Mapping.MapperConstructor
  • MockAnalyzerDialog
  • create_mapper()
  • optimize_mapper()
• Mapping.MappingOptimizer
  • draw_zoomed_peaks_for_proof()
  • get_reliable_peak_top_x()
  • make_slice_for_optimization()
  • optimize_mapping_impl()
• Mapping.MappingParams
  • MappedInfo
    • MappedInfo.needs_sd_corrcetion()
  • MappingParams
    • MappingParams.get_uv_correction_str()
    • MappingParams.get_xray_correction_str()
  • get_mapper_opt_params()
  • get_mapper_simplest_params()
  • set_mapper_opt_params()
• Mapping.MappingUtils
  • debug_plot_mapping()
  • save_mapped_curves()
• Mapping.MappingV2Utils
  • make_mapped_info_for_v2()
• Mapping.PeakCurve
  • PeakCurve
    • PeakCurve.get_major_peak_info()
    • PeakCurve.get_peak_region_width()
  • get_peak_curve_info()
  • shift_range_pairs()
• Mapping.PeakMapper
  • LessPeakCurve
  • MajorCurve
  • MappedInfo
    • MappedInfo.uv_to_xr()
    • MappedInfo.xr_to_uv()
  • PeakMapper
    • PeakMapper.add_corresponding_peaks()
    • PeakMapper.can_be_deemed_single_peak()
    • PeakMapper.check_minimum_mapping_quality()
    • PeakMapper.check_peak_existence()
    • PeakMapper.compare_primary_peak_mapping_params()
    • PeakMapper.compute_mapped_curve_simimarity()
    • PeakMapper.do_mapping()
    • PeakMapper.evaluate_mapping()
    • PeakMapper.evaluate_mapping_features()
    • PeakMapper.evaluate_mapping_impl()
    • PeakMapper.find_best_mapping()
    • PeakMapper.find_best_mapping_impl()
    • PeakMapper.find_counter_part_bottom()
    • PeakMapper.find_counter_part_peak()
    • PeakMapper.find_the_nearest_index()
    • PeakMapper.find_valley_bottom_pair()
    • PeakMapper.get_best_mapping_features_params()
    • PeakMapper.get_best_mapping_params()
    • PeakMapper.get_imroved_mapping()
    • PeakMapper.get_mapped_curves()
    • PeakMapper.get_simplest_params()
    • PeakMapper.get_sliced_peak_mapper()
    • PeakMapper.improve_slices_if_possible()
    • PeakMapper.make_better_curve()
    • PeakMapper.make_it_compatible_from_sliced()
    • PeakMapper.make_thinner_curve()
    • PeakMapper.preliminary_check()
    • PeakMapper.reconstruct_curves_simple()
    • PeakMapper.show_mapping_proof()
  • ProxyCurve
    • ProxyCurve.correct_valley_bottm()
    • ProxyCurve.get_peak_region_width()
  • debug_plot()
  • make_unique_boundaries()
  • make_unique_peak_info()
  • mapping_proof()
  • simple_plot_pair_curves()
  • slice_length()
• Mapping.PeakMappingRefiner
  • PeakMappingRefiner
    • PeakMappingRefiner.find_counter_part()
    • PeakMappingRefiner.maps_well_linearly()
    • PeakMappingRefiner.peak_tops_correct()
    • PeakMappingRefiner.refine_mapping_params()
• Mapping.PeakMappingSolver
  • PeakMappingSolver
    • PeakMappingSolver.evaluate_grouping()
    • PeakMappingSolver.get_opt_mappers()
• Mapping.ReducedCurve
  • make_reduced_curve()
• Mapping.SimplestMapper
  • SimplestMapper
    • SimplestMapper.map_1to2()
• Mapping.SingleComponent
  • SingleComponent
    • SingleComponent.compute_sci()
    • SingleComponent.compute_sci_ratio()
• Mapping.SurveyUtils
  • write_info()