Microfluidics

Submodules

• Microfluidics.AverageSubtractorDialog
  • AverageSubtractorDialog
    • AverageSubtractorDialog.body()
    • AverageSubtractorDialog.buttonbox()
    • AverageSubtractorDialog.generate_pattern()
    • AverageSubtractorDialog.is_busy()
    • AverageSubtractorDialog.on_entry_in_folder()
    • AverageSubtractorDialog.on_entry_out_folder()
    • AverageSubtractorDialog.save_background_data()
    • AverageSubtractorDialog.show()
    • AverageSubtractorDialog.show_backgroud_maker_dialog()
    • AverageSubtractorDialog.subtract()
• Microfluidics.BackgroundMaker
  • BackgroundMaker2dFrame
    • BackgroundMaker2dFrame.apply()
    • BackgroundMaker2dFrame.build_bframe()
    • BackgroundMaker2dFrame.draw()
    • BackgroundMaker2dFrame.draw_selection()
    • BackgroundMaker2dFrame.draw_selection_guide()
    • BackgroundMaker2dFrame.draw_the_bridge_suggested_curves()
    • BackgroundMaker2dFrame.get_default_elution_slice()
    • BackgroundMaker2dFrame.get_toggle_xlim()
    • BackgroundMaker2dFrame.onselect()
    • BackgroundMaker2dFrame.redraw_the_angular_canvas()
    • BackgroundMaker2dFrame.set_small_xlim()
    • BackgroundMaker2dFrame.spinbox_tracer()
  • BackgroundMakerDialog
    • BackgroundMakerDialog.apply()
    • BackgroundMakerDialog.buttonbox()
    • BackgroundMakerDialog.get_bridge_slice()
    • BackgroundMakerDialog.get_frame_class()
    • BackgroundMakerDialog.get_the_background_info()
    • BackgroundMakerDialog.tell_xray_frame_redraw()
    • BackgroundMakerDialog.toggle_3d_view()
  • BackgroundMakerFrame
    • BackgroundMakerFrame.build_title()
    • BackgroundMakerFrame.forget_3d_canvas()
    • BackgroundMakerFrame.get_frame_classes()
• Microfluidics.ConcNormalizer
  • find_conc_file()
  • normalize_impl()
• Microfluidics.ConcNormalizerDialog
  • ConcNormalizerDialog
    • ConcNormalizerDialog.body()
    • ConcNormalizerDialog.buttonbox()
    • ConcNormalizerDialog.is_busy()
    • ConcNormalizerDialog.normalize()
    • ConcNormalizerDialog.on_entry_in_folder()
    • ConcNormalizerDialog.on_entry_out_folder()
    • ConcNormalizerDialog.show()
• Microfluidics.DataSubtractor
  • subtract_impl()
• Microfluidics.DelayAdjuster
  • DelayAdjuster
    • DelayAdjuster.apply()
    • DelayAdjuster.body()
    • DelayAdjuster.build_canvas()
    • DelayAdjuster.build_params_frame()
    • DelayAdjuster.close()
    • DelayAdjuster.draw_elution()
    • DelayAdjuster.draw_init()
    • DelayAdjuster.exit()
    • DelayAdjuster.get_canvas_width()
    • DelayAdjuster.ok()
    • DelayAdjuster.show()
• Microfluidics.DelayOptimizer
  • DelayOptimizer
    • DelayOptimizer.get_initial_data()
    • DelayOptimizer.get_optimized_data()
    • DelayOptimizer.get_slice()
    • DelayOptimizer.get_y_channel_point()
    • DelayOptimizer.optimize_with_two_steps()
    • DelayOptimizer.recognize_y_channel_location()
• Microfluidics.FlowSimulator
  • FlowSimulator
    • FlowSimulator.get_linear_range_info()
    • FlowSimulator.get_optimizer_indeces()
    • FlowSimulator.get_y_channel_index()
    • FlowSimulator.get_y_channel_interval()
    • FlowSimulator.guess_range()
    • FlowSimulator.make_simulation_data()
    • FlowSimulator.read_the_book()
    • FlowSimulator.set_params()
    • FlowSimulator.set_params_without_book()
    • FlowSimulator.verify_eno_interval()
  • SimInfo
• Microfluidics.IndividualSubtractorDialog
  • IndividualSubtractorDialog
    • IndividualSubtractorDialog.body()
    • IndividualSubtractorDialog.buttonbox()
    • IndividualSubtractorDialog.generate_pattern()
    • IndividualSubtractorDialog.is_busy()
    • IndividualSubtractorDialog.on_entry_in_folder()
    • IndividualSubtractorDialog.on_entry_out_folder()
    • IndividualSubtractorDialog.show()
    • IndividualSubtractorDialog.subtract()
• Microfluidics.InspectionInAngles
  • InspectionInAnglesDialog
    • InspectionInAnglesDialog.angular_index_tracer()
    • InspectionInAnglesDialog.body()
    • InspectionInAnglesDialog.builf_control_panel()
    • InspectionInAnglesDialog.draw_decomposition()
    • InspectionInAnglesDialog.geometry_cb()
    • InspectionInAnglesDialog.show()
• Microfluidics.MctDecompDialog
• Microfluidics.MctRangeInfo
  • MctRangeInfo
• Microfluidics.MethodAdjusterFrame
  • MethodAdjusterFrame
    • MethodAdjusterFrame.body()
    • MethodAdjusterFrame.body_trash()
• Microfluidics.MethodFile
  • MethodFile
    • MethodFile.compute_elution_data()
    • MethodFile.get_elution_data()
    • MethodFile.get_linear_slope_ends()
    • MethodFile.guess_critical_points()
    • MethodFile.guess_range()
• Microfluidics.MethodFileSimulator
  • MethodFileSimulator
    • MethodFileSimulator.set_params()
  • set_default_params()
• Microfluidics.MicrofluidicElution
  • CurveSimilarityProxy
    • CurveSimilarityProxy.inverse_int_value()
  • MicrofluidicElution
    • MicrofluidicElution.create_flow_change_proxy()
    • MicrofluidicElution.propose_background_range()
    • MicrofluidicElution.set_baseplane_params_as_a_temp_fix()
    • MicrofluidicElution.set_flow_changes_as_a_temp_fix()
  • SimpleFlowChangeProxy
    • SimpleFlowChangeProxy.get_flow_changes()
    • SimpleFlowChangeProxy.get_raw_flow_changes()
    • SimpleFlowChangeProxy.get_real_flow_changes()
  • get_mtd_elution()
• Microfluidics.MicrofluidicMapping
  • compute_mapping_params()
  • determine_mapping_ranges()
  • make_microfluidic_mapped_vector()
  • make_microfluidic_mapping_info_impl()
• Microfluidics.MinimumSurface
  • MinimumSurface
  • compute_min_norm()
  • make_it_into_a_movie()
  • plot_surface()
• Microfluidics.PreprocessDialog
  • PreprocessDialog
    • PreprocessDialog.apply()
    • PreprocessDialog.body()
    • PreprocessDialog.buttonbox()
    • PreprocessDialog.close()
    • PreprocessDialog.exit()
    • PreprocessDialog.ok()
    • PreprocessDialog.show()
• Microfluidics.SimpleSolver
  • SimpleSolver
    • SimpleSolver.get_crossing_point()
    • SimpleSolver.get_fit_model()
    • SimpleSolver.guess_blank_location()
    • SimpleSolver.guess_init_C()
    • SimpleSolver.plot_guess()
    • SimpleSolver.solve()
• Microfluidics.SimpleTutorial
  • SimpleTutorial
    • SimpleTutorial.apply()
    • SimpleTutorial.body()
    • SimpleTutorial.build_canvas()
    • SimpleTutorial.build_entryframe()
    • SimpleTutorial.close()
    • SimpleTutorial.draw()
    • SimpleTutorial.draw_ab_params()
    • SimpleTutorial.draw_solved_data()
    • SimpleTutorial.draw_test_data()
    • SimpleTutorial.exit()
    • SimpleTutorial.make_params()
    • SimpleTutorial.ok()
    • SimpleTutorial.on_button_press()
    • SimpleTutorial.set_params()
    • SimpleTutorial.show()
    • SimpleTutorial.solve()
    • SimpleTutorial.solve_irregular()
    • SimpleTutorial.solve_regular1()
    • SimpleTutorial.solve_regular2()
• Microfluidics.SimpleUnfolding
  • MAX_ITERATION_FMIN_CG
  • SimpleUnfolding
    • SimpleUnfolding.compute_Pf()
    • SimpleUnfolding.compute_error()
    • SimpleUnfolding.compute_yf()
    • SimpleUnfolding.compute_yu()
    • SimpleUnfolding.fit()
    • SimpleUnfolding.make_conc_vector()
    • SimpleUnfolding.make_data()
  • proportion_folded()
• Microfluidics.SubtractorFrame
  • SubtractorFrame
    • SubtractorFrame.body()
    • SubtractorFrame.build_canvas_2d()
    • SubtractorFrame.build_canvas_3d()
    • SubtractorFrame.generate_pattern()
    • SubtractorFrame.is_busy()
    • SubtractorFrame.on_button_press()
    • SubtractorFrame.on_entry_in_folder()
    • SubtractorFrame.on_entry_out_folder()
    • SubtractorFrame.subtract()
    • SubtractorFrame.toggle_2d3d()
• Microfluidics.ThreeStateDimerSolver
  • ThreeStateCurves
    • ThreeStateCurves.compute_yi()
    • ThreeStateCurves.compute_yn()
    • ThreeStateCurves.compute_yu()
  • ThreeStateDimerSolver
    • ThreeStateDimerSolver.compute_components()
    • ThreeStateDimerSolver.draw_components_with_bands()
    • ThreeStateDimerSolver.get_imermediate_topx()
    • ThreeStateDimerSolver.get_modeled_curves()
    • ThreeStateDimerSolver.plot_components()
    • ThreeStateDimerSolver.solve()
  • compute_C()
  • compute_constant_k()
• Microfluidics.ThreeStateMonomerSolver
  • ThreeStateCurves
    • ThreeStateCurves.compute_yi()
    • ThreeStateCurves.compute_yn()
    • ThreeStateCurves.compute_yu()
  • ThreeStateMonomerSolver
    • ThreeStateMonomerSolver.compute_components()
    • ThreeStateMonomerSolver.draw_components_with_bands()
    • ThreeStateMonomerSolver.get_imermediate_topx()
    • ThreeStateMonomerSolver.get_modeled_curves()
    • ThreeStateMonomerSolver.plot_components()
    • ThreeStateMonomerSolver.solve()
  • compute_C()
  • compute_constant_k1()
  • compute_constant_k2()
• Microfluidics.TwoStateSolver
  • TwoStateCurves
    • TwoStateCurves.compute_yf()
    • TwoStateCurves.compute_yu()
  • TwoStateSolver
    • TwoStateSolver.compute_components()
    • TwoStateSolver.draw_components_with_bands()
    • TwoStateSolver.get_crossing_point()
    • TwoStateSolver.get_modeled_curves()
    • TwoStateSolver.guess_blank_location()
    • TwoStateSolver.plot_components()
    • TwoStateSolver.solve()
• Microfluidics.UnfoldingModel
  • UnfoldingModel
    • UnfoldingModel.compute_Pf()
    • UnfoldingModel.compute_yf()
    • UnfoldingModel.compute_yu()
    • UnfoldingModel.fit()
• Microfluidics.UnfoldingTutorial
  • UnfoldingTutorial
    • UnfoldingTutorial.apply()
    • UnfoldingTutorial.body()
    • UnfoldingTutorial.build_canvas()
    • UnfoldingTutorial.build_entryframe()
    • UnfoldingTutorial.close()
    • UnfoldingTutorial.draw()
    • UnfoldingTutorial.draw_ab_params()
    • UnfoldingTutorial.draw_solved_data()
    • UnfoldingTutorial.draw_test_data()
    • UnfoldingTutorial.exit()
    • UnfoldingTutorial.make_params()
    • UnfoldingTutorial.ok()
    • UnfoldingTutorial.on_button_press()
    • UnfoldingTutorial.set_params()
    • UnfoldingTutorial.show()
    • UnfoldingTutorial.solve()
    • UnfoldingTutorial.solve_irregular()
    • UnfoldingTutorial.solve_regular()