Extrapolation

Submodules

• Extrapolation.AlmergeAnalyzer
  • AlmergeAnalyzerDialog
    • AlmergeAnalyzerDialog.apply()
    • AlmergeAnalyzerDialog.body()
    • AlmergeAnalyzerDialog.show()
• Extrapolation.AutoRangeInspector
  • AutoRangeInspector
    • AutoRangeInspector.body()
    • AutoRangeInspector.inspect()
    • AutoRangeInspector.inspect_start()
    • AutoRangeInspector.inspect_thread()
    • AutoRangeInspector.watch()
  • StdoutRedirector
    • StdoutRedirector.flush()
    • StdoutRedirector.write()
• Extrapolation.ConcOptsDialog
  • ConcOptsDialog
    • ConcOptsDialog.adjust_geometry()
    • ConcOptsDialog.apply()
    • ConcOptsDialog.body()
    • ConcOptsDialog.plot_normalized_curves()
    • ConcOptsDialog.show()
• Extrapolation.ConjugateGradientDemo
• Extrapolation.ConjugateGradientThreeD
  • GdAnimationDialog
    • GdAnimationDialog.body()
    • GdAnimationDialog.buttonbox()
    • GdAnimationDialog.show()
  • GdTreedPlot
    • GdTreedPlot.animate_trace_2d()
    • GdTreedPlot.animate_trace_3d()
    • GdTreedPlot.draw()
  • compute_norm_1d()
  • compute_norm_2d()
  • dot_plot_wa()
• Extrapolation.ExSolver
  • ExSolver
    • ExSolver.solve()
• Extrapolation.ExtrapolSolverDialog
  • ExtrapolSolverDialog
    • ExtrapolSolverDialog.add_dnd_bind()
    • ExtrapolSolverDialog.apply()
    • ExtrapolSolverDialog.auto_cdi_for_all()
    • ExtrapolSolverDialog.body()
    • ExtrapolSolverDialog.buttonbox()
    • ExtrapolSolverDialog.cancel()
    • ExtrapolSolverDialog.canvas_draw()
    • ExtrapolSolverDialog.get_ignore_bq()
    • ExtrapolSolverDialog.get_known_info_list()
    • ExtrapolSolverDialog.log_rg_info()
    • ExtrapolSolverDialog.on_drop()
    • ExtrapolSolverDialog.on_the_fly()
    • ExtrapolSolverDialog.plot_guinier_kratky()
    • ExtrapolSolverDialog.plot_known()
    • ExtrapolSolverDialog.save_results()
    • ExtrapolSolverDialog.save_the_figure()
    • ExtrapolSolverDialog.set_geometry()
    • ExtrapolSolverDialog.show()
    • ExtrapolSolverDialog.show_quality_warning()
    • ExtrapolSolverDialog.solve_plot()
    • ExtrapolSolverDialog.solve_unknowns()
    • ExtrapolSolverDialog.try_image_save()
    • ExtrapolSolverDialog.update_to_solve_range()
    • ExtrapolSolverDialog.validate()
  • format_func()
• Extrapolation.ExtrapolationAnimation
  • ExtrapolationAnimationDialog
    • ExtrapolationAnimationDialog.body()
    • ExtrapolationAnimationDialog.on_click()
    • ExtrapolationAnimationDialog.show()
    • ExtrapolationAnimationDialog.update_guide_text()
  • format_func()
• Extrapolation.ExtrapolationControlPanel
  • ControlPanel
    • ControlPanel.known_tracer()
  • KnownControlPanel
    • KnownControlPanel.on_entry_file()
  • UnknownControlPanel
    • UnknownControlPanel.aplly_new_range()
    • UnknownControlPanel.bq_widgets_update()
    • UnknownControlPanel.get_file_name()
    • UnknownControlPanel.get_penalty_weights()
    • UnknownControlPanel.ignore_bq_tracer()
    • UnknownControlPanel.make_animation()
    • UnknownControlPanel.parameter_tracer()
    • UnknownControlPanel.set_C_matrix()
    • UnknownControlPanel.show_cdi_dialog()
    • UnknownControlPanel.show_denss_dialog()
    • UnknownControlPanel.show_range_inspector()
    • UnknownControlPanel.solve_plot()
• Extrapolation.ExtrapolationDebugger
  • ExtrapolationDebugger
    • ExtrapolationDebugger.save_info()
• Extrapolation.ExtrapolationDenssMenu
  • ExtrapolationDenssMenu
    • ExtrapolationDenssMenu.show_denss_gui()
    • ExtrapolationDenssMenu.show_denss_manager()
    • ExtrapolationDenssMenu.show_ed_viewer()
    • ExtrapolationDenssMenu.show_saxs_simulator()
    • ExtrapolationDenssMenu.submit_all()
• Extrapolation.ExtrapolationProof
  • AlMergeSolver
    • AlMergeSolver.copy()
    • AlMergeSolver.plot_A()
    • AlMergeSolver.plot_B()
    • AlMergeSolver.scale()
    • AlMergeSolver.solve()
  • IteratedWLS
    • IteratedWLS.solve()
  • MpInverse
    • MpInverse.solve()
  • NormMinizerSmoothed
    • NormMinizerSmoothed.solve()
  • ProofViewer
    • ProofViewer.apply()
    • ProofViewer.body()
    • ProofViewer.save_image()
    • ProofViewer.show()
  • ZxSolver
    • ZxSolver.plot()
    • ZxSolver.plot_A()
    • ZxSolver.plot_B()
    • ZxSolver.plot_func()
  • compute_nrmsd()
  • create_plot_specs()
  • do_a_range()
  • do_a_range_almerge()
  • do_a_range_definitive()
  • do_a_range_denoise()
  • survey_for_all_data()
• Extrapolation.ExtrapolationSolver
  • ExtrapolationSolver
    • ExtrapolationSolver.compute_error()
    • ExtrapolationSolver.compute_error_grad()
    • ExtrapolationSolver.compute_known_error()
    • ExtrapolationSolver.compute_known_error_grad()
    • ExtrapolationSolver.compute_propagated_errors()
    • ExtrapolationSolver.compute_propagated_errors_from_denoised_error()
    • ExtrapolationSolver.extrapolate_wiser()
    • ExtrapolationSolver.fit()
    • ExtrapolationSolver.get_anim_data()
    • ExtrapolationSolver.set_known_peak_info()
  • KnownInfo
  • run_extrapolation_solver()
  • run_extrapolation_solver_impl()
  • run_extrapolation_solver_with_progress()
• Extrapolation.KnownPeakPenalty
  • compute_known_error_grad_impl()
  • compute_known_error_impl()
• Extrapolation.KnownPeakPenaltyNumba
  • compute_known_error_grad_impl()
  • compute_known_error_impl()
• Extrapolation.MatrixFactorAlternate
  • MatrixFactorAlternate
  • design_figure()
• Extrapolation.PeakSetSelector
  • KnownRec
  • PeakSetSelector
    • PeakSetSelector.row_info_dict
    • PeakSetSelector.select_demo_ranges_for_gd()
    • PeakSetSelector.select_peakset()
    • PeakSetSelector.update_known_peak_info_list()
  • get_range_from_elm_recs()
• Extrapolation.PreviewButtonFrame
  • PreviewButtonFrame
    • PreviewButtonFrame.config_states()
    • PreviewButtonFrame.config_states_alternative()
    • PreviewButtonFrame.do_devel_test()
    • PreviewButtonFrame.get_cnv_ranges()
    • PreviewButtonFrame.get_conc_depend()
    • PreviewButtonFrame.get_desired_serial_data()
    • PreviewButtonFrame.get_last_change_id_from_advanced_frame()
    • PreviewButtonFrame.get_preview_data()
    • PreviewButtonFrame.memorize_preview_data()
    • PreviewButtonFrame.rank_control_tracer()
    • PreviewButtonFrame.remove_guard_for_three_state_model()
    • PreviewButtonFrame.set_conc_depend()
    • PreviewButtonFrame.set_guard_for_three_state_model()
    • PreviewButtonFrame.show_conc_opts_dialog()
    • PreviewButtonFrame.show_zx_preview()
    • PreviewButtonFrame.show_zx_preview_using_pool()
    • PreviewButtonFrame.update_modelframe()
    • PreviewButtonFrame.update_settings()
    • PreviewButtonFrame.update_widgets()
• Extrapolation.PreviewController
• Extrapolation.PreviewData
  • PreviewData
    • PreviewData.get_analysis_ranges()
    • PreviewData.make_conc_vector()
  • PreviewOptions
• Extrapolation.PreviewResultSaver
  • PreviewResultSaverDialog
    • PreviewResultSaverDialog.adjust_geometry()
    • PreviewResultSaverDialog.body()
    • PreviewResultSaverDialog.buttonbox()
    • PreviewResultSaverDialog.save_data()
    • PreviewResultSaverDialog.save_extra_data()
    • PreviewResultSaverDialog.show()
    • PreviewResultSaverDialog.validate()
• Extrapolation.RangeInspector
  • RangeInspectorDialog
    • RangeInspectorDialog.apply()
    • RangeInspectorDialog.auto_inspection()
    • RangeInspectorDialog.body()
    • RangeInspectorDialog.build_canvas()
    • RangeInspectorDialog.build_panel()
    • RangeInspectorDialog.builf_distinction()
    • RangeInspectorDialog.clear_scattering_curves()
    • RangeInspectorDialog.compute_almerge_scattering()
    • RangeInspectorDialog.compute_nSRD_info()
    • RangeInspectorDialog.compute_peak_top_scattering()
    • RangeInspectorDialog.compute_rg_info()
    • RangeInspectorDialog.create_line_variables()
    • RangeInspectorDialog.create_range_variables()
    • RangeInspectorDialog.draw_elution()
    • RangeInspectorDialog.draw_scattering()
    • RangeInspectorDialog.get_initial_range()
    • RangeInspectorDialog.get_range()
    • RangeInspectorDialog.init_control_vars()
    • RangeInspectorDialog.keep_scattering_curve()
    • RangeInspectorDialog.layout_distinction()
    • RangeInspectorDialog.line_buttons_tracer()
    • RangeInspectorDialog.on_mouse_motion()
    • RangeInspectorDialog.place_diff_toggle_button()
    • RangeInspectorDialog.place_line_buttons()
    • RangeInspectorDialog.place_scale_buttons()
    • RangeInspectorDialog.plot_distinction()
    • RangeInspectorDialog.plot_rg_errorbar()
    • RangeInspectorDialog.range_ends_tracer()
    • RangeInspectorDialog.scale_type_tracer()
    • RangeInspectorDialog.show()
    • RangeInspectorDialog.show_diff_mode_tracer()
    • RangeInspectorDialog.show_guinier_kratky_plots()
    • RangeInspectorDialog.show_quality_warning()
    • RangeInspectorDialog.solve_this_range()
    • RangeInspectorDialog.update_almerge_line()
    • RangeInspectorDialog.update_current_manip_info()
    • RangeInspectorDialog.update_diff_info()
    • RangeInspectorDialog.update_drawing()
    • RangeInspectorDialog.update_yscale()
    • RangeInspectorDialog.validate()
• Extrapolation.RankInspection
  • RankInspectionFigure
    • RankInspectionFigure.body()
    • RankInspectionFigure.buttonbox()
    • RankInspectionFigure.show()
• Extrapolation.ScatteringCurveViewer
  • ScatteringCurveViewer
    • ScatteringCurveViewer.body()
    • ScatteringCurveViewer.buttonbox()
    • ScatteringCurveViewer.kratky_plot()
    • ScatteringCurveViewer.linear_plot()
    • ScatteringCurveViewer.log_plot()
    • ScatteringCurveViewer.plain_plot()
    • ScatteringCurveViewer.show()
• Extrapolation.SmoothFactorizer
  • SmoothFactorizer
    • SmoothFactorizer.compute_error()
    • SmoothFactorizer.compute_error_grad()
    • SmoothFactorizer.mimimize()
    • SmoothFactorizer.solve()
• Extrapolation.SmoothnessPenalty
  • SmoothnessPenalty
    • SmoothnessPenalty.get_penalties()
    • SmoothnessPenalty.get_penalties_bq_ignore()
    • SmoothnessPenalty.get_penalty_diff()
    • SmoothnessPenalty.get_penalty_diff_bq_ignore()
    • SmoothnessPenalty.get_reshaped()
  • diff_matrix()
  • get_penalty_diff_impl()
  • get_penalty_impl()
  • kth_diag_indices()
  • norm_diff_matrix()
• Extrapolation.SmoothnessPenaltyNumba
  • get_penalty_bq_ignore_impl_numba()
  • get_penalty_diff_bq_ignore_impl_numba()
  • get_penalty_diff_impl_numba()
  • get_penalty_impl_numba()
• Extrapolation.WeightedLRF
  • compute_reciprocally_weighted_matrices()