SecTheory

Submodules

• SecTheory.BasicModels
  • SimpleSec
    • SimpleSec.get_elution()
  • fit_single_pore()
  • robust_single_pore_pdf()
  • robust_single_pore_pdf_scaled()
  • single_pore_elution()
  • single_pore_height()
  • single_pore_pdf()
• SecTheory.BasicProofs
  • numerical_inversion_proof()
  • roud_trip()
  • simple_pdf()
• SecTheory.BoundControl
• SecTheory.Cavazzini1999
  • single_site_cf()
  • three_site_cf()
  • two_site_cf()
  • uniform_adsorption_energy()
  • uniform_mean_sojourn_time()
• SecTheory.CavazziniProof
  • TwoSiteAlphaModel
    • TwoSiteAlphaModel.fit()
  • TwoSiteModel
    • TwoSiteModel.fit()
  • TwoSiteSpikeModel
  • demo0()
  • demo1()
  • fitting_demo_impl()
  • fitting_demo_single_site()
  • fitting_demo_three_site()
  • fitting_demo_two_site()
  • fitting_demo_uniform_adsorption_energy()
  • fitting_demo_uniform_mean_sojourn_time()
  • real_demo()
  • real_demo1()
• SecTheory.ColumnConstants
• SecTheory.ColumnIllust
  • demo()
  • plot_column_illust()
  • plot_column_legend()
• SecTheory.ConformanceDemo
  • ConformanceDemo
    • ConformanceDemo.body()
    • ConformanceDemo.check_clicked()
    • ConformanceDemo.get_rg()
    • ConformanceDemo.get_sigma()
    • ConformanceDemo.radio1_clicked()
    • ConformanceDemo.radio2_clicked()
    • ConformanceDemo.reset_check()
    • ConformanceDemo.reset_radio2()
    • ConformanceDemo.reset_sliders()
    • ConformanceDemo.show()
    • ConformanceDemo.slider0_egh_update()
    • ConformanceDemo.slider0_update()
    • ConformanceDemo.slider1_egh_update()
    • ConformanceDemo.slider1_update()
    • ConformanceDemo.slider2_egh_update()
    • ConformanceDemo.slider2_update()
    • ConformanceDemo.slider3_egh_update()
    • ConformanceDemo.slider3_update()
    • ConformanceDemo.slider_update_cleaner()
    • ConformanceDemo.start_interactive()
    • ConformanceDemo.update_texts()
  • DisplaySlider
    • DisplaySlider.on_changed()
  • SecConfCurve
  • demo()
• SecTheory.CumsumInverse
  • cumsum_inverse()
• SecTheory.DiporeSecSimulation
  • demo()
• SecTheory.DiporeSimulation
  • demo()
• SecTheory.Distinction
  • hard_sphere_curves()
  • sec_elution_curves()
• SecTheory.Dondi1986
  • demo()
• SecTheory.Dondi2002
  • dispersive_sec()
  • monopore_gec()
  • twopore_gec()
• SecTheory.DondiProof
  • fitting_demo_dispersive_sec()
  • fitting_demo_impl()
  • fitting_demo_monopore_gec()
  • fitting_demo_twopore_gec()
• SecTheory.Edm
  • Edm
    • Edm.get_comp_params()
  • edm_func()
  • guess_multiple_edms()
  • guess_single_edm()
• SecTheory.EdmDemo
  • animation()
  • demo_2d()
  • demo_3d()
  • emg_vs_edm()
  • paper_proof_1()
  • peak_fronting_animation()
  • peak_fronting_demo()
  • peak_fronting_demo_3d()
  • peak_tailing_demo()
  • peak_tailing_demo_3d()
  • peak_taling_animation()
  • quadratic_isotherm()
• SecTheory.EdmSpike
  • guess_edm_initial_params()
  • spike()
• SecTheory.EghCompat
  • verify_basic_assumptions()
• SecTheory.ExclCurveUtils
  • safely_create_spline_from_points()
• SecTheory.ExclusionCurveSpike
  • ExclusionCurvepy
    • ExclusionCurvepy.compute_deviation()
    • ExclusionCurvepy.compute_tr()
    • ExclusionCurvepy.fit()
  • compute_tr_impl()
  • demo()
• SecTheory.Felinger2005
  • MonoPoreModel
    • MonoPoreModel.fit()
  • MonoPoreMovingZoneModel
    • MonoPoreMovingZoneModel.fit()
  • demo()
  • real_demo()
• SecTheory.FitTrialNonCf
  • DemoDialog
    • DemoDialog.body()
    • DemoDialog.buttonbox()
    • DemoDialog.run()
    • DemoDialog.show()
  • fitting_demo()
• SecTheory.FoleyDorseyEmg
  • compute_sigma()
  • compute_tau()
  • compute_tau_simple()
  • convert_to_xr_params_fd()
  • fd_estimate_initial_params()
  • spike_demo()
• SecTheory.HermansEmg
  • compute_momemts_from_params()
  • compute_moments_from_ksec_p_r()
  • compute_params_from_momemts()
  • convert_to_xr_params_hermans()
  • estimate_initial_params()
  • estimate_secparams_and_R()
  • spike_demo()
• SecTheory.InitialGuess
  • InitialGuess
    • InitialGuess.get_params()
  • InitialGuessAdapter
• SecTheory.LanJorgensonEgh
  • compute_sigma()
  • compute_tau()
  • convert_to_xr_params_lj()
  • lj_estimate_better()
  • lj_estimate_initial_params()
• SecTheory.LocalOptimizer
  • LocalOptimizer
    • LocalOptimizer.objective_all()
    • LocalOptimizer.optimize()
  • RgInfo
    • RgInfo.get_bound_penalty()
    • RgInfo.get_order_penalty()
  • SecInfo
    • SecInfo.get_sec_params()
  • split_params()
• SecTheory.LognormalPoreCF
  • lognormal_pore_phi_impl()
• SecTheory.LognormalStudy
  • demo()
  • lognormal_pdf()
• SecTheory.MartinSynge
  • num_plates_demo()
• SecTheory.MolassProof
  • demo()
  • proof_1()
• SecTheory.MomentAnalysis
  • estimate_sec_params()
• SecTheory.MonoPore
  • compute_mu_sigma()
  • compute_rg()
  • estimate_monopore_params()
  • estimate_uv_scale_params()
  • get_modified_params()
• SecTheory.MonoporeExclCurve
  • compute_confpoints_impl()
  • compute_excurve_impl()
  • create_spline()
  • demo()
  • estimate_monopore_exclcurve()
• SecTheory.MonoporeSecSimulation
  • compare_simple_curve()
  • compare_stochastic_dispersive()
  • demo()
• SecTheory.MonoporeSimulation
  • demo()
• SecTheory.MwRgFigure
  • MwRgFigure
    • MwRgFigure.body()
    • MwRgFigure.buttonbox()
    • MwRgFigure.draw_mwrg_figure()
    • MwRgFigure.on_click()
    • MwRgFigure.show()
• SecTheory.MwRgInfo
  • MwRgInfo
    • MwRgInfo.compute_mw()
    • MwRgInfo.compute_rg()
  • get_mwrg_info()
• SecTheory.NumPlates
  • compute_retention_time_from_N()
  • contrast_sigma_info()
• SecTheory.OligoporeExclCurve
  • compute_confpoints_impl()
  • compute_excurve_impl()
  • create_spline()
  • demo()
  • estimate_polypore_exclcurve()
• SecTheory.PeakAsymmetry
  • DisplaySlider
    • DisplaySlider.on_changed()
  • PeakAsymmetry
    • PeakAsymmetry.body()
    • PeakAsymmetry.check_clicked()
    • PeakAsymmetry.radio1_clicked()
    • PeakAsymmetry.radio2_clicked()
    • PeakAsymmetry.reset_check()
    • PeakAsymmetry.reset_radio2()
    • PeakAsymmetry.reset_sliders()
    • PeakAsymmetry.show()
    • PeakAsymmetry.slider0_egh_update()
    • PeakAsymmetry.slider0_update()
    • PeakAsymmetry.slider1_egh_update()
    • PeakAsymmetry.slider1_update()
    • PeakAsymmetry.slider2_egh_update()
    • PeakAsymmetry.slider2_update()
    • PeakAsymmetry.slider3_egh_update()
    • PeakAsymmetry.slider3_update()
    • PeakAsymmetry.slider_update_cleaner()
    • PeakAsymmetry.start_interactive()
  • demo()
• SecTheory.PlateNumberEgh
  • convert_to_xr_params()
  • pn_estimate_initial_params()
• SecTheory.PlateTheory
  • demo()
  • demo2()
  • demo3()
  • draw_column()
  • update_states()
• SecTheory.PoresizeFreedom
  • adjust_to_poresize()
  • freedom_plot()
• SecTheory.RealisticProof
  • RealisticCf
    • RealisticCf.objective_func()
    • RealisticCf.print_params()
    • RealisticCf.split_params()
  • fitting_demo()
  • single_pore_cf()
• SecTheory.RealisticSolver
  • RealisticCfDomain
    • RealisticCfDomain.fit()
    • RealisticCfDomain.get_component_splines()
    • RealisticCfDomain.get_spline()
• SecTheory.RetensionTime
  • compute_retention_time()
  • compute_rg_from_retention_time()
  • estimate_conformance_params()
  • estimate_conformance_params_fixed_poreexponent()
  • estimate_init_rgs()
  • make_initial_guess()
• SecTheory.SecCF
  • dispersive_monopore()
  • gec_dipore_phi()
  • gec_monopore_phi()
  • gec_oligopore_phi_impl()
  • gec_polypore_phi()
  • gec_tripore_phi()
  • moving_zone_phi()
  • sdm_dipore()
  • sdm_monopore()
  • sdm_tripore()
  • sec_oligopore_phi_impl()
  • shifted_phi()
  • simple_phi()
  • two_site_phi()
• SecTheory.SecEstimator
  • SecEstimator
    • SecEstimator.fit_to_decomposition()
    • SecEstimator.get_params()
  • guess_initial_secparams()
• SecTheory.SecPDF
  • BidirectFft
    • BidirectFft.compute_y()
    • BidirectFft.compute_z()
    • BidirectFft.get_w()
  • FftInvImpl
    • FftInvImpl.compute()
    • FftInvImpl.get_w()
  • FftInvPdf
  • compute_standard_wCD()
• SecTheory.SecParamsPlot
  • compute_sec_peak_params()
  • draw_sec_curve()
  • plot_sec_params()
  • plot_sec_params_impl()
• SecTheory.SecParamsSurvey
  • collect_sec_params()
  • inspect_sec_params()
• SecTheory.SecSimulator
  • SecSimulator
    • SecSimulator.body()
    • SecSimulator.build_panel()
    • SecSimulator.buttonbox()
    • SecSimulator.compute_draw_params()
    • SecSimulator.conform()
    • SecSimulator.create_axes()
    • SecSimulator.get_gk_info()
    • SecSimulator.get_lrf_info()
    • SecSimulator.get_values_from_sliders()
    • SecSimulator.initialize_from_optimizer()
    • SecSimulator.initilize_for_unit_test()
    • SecSimulator.redraw()
    • SecSimulator.reset()
    • SecSimulator.set_slider_specs()
    • SecSimulator.show()
    • SecSimulator.show_mwrg_figure()
  • demo()
• SecTheory.Sepsey2014
  • lognormal_pore_cf()
  • lognormal_pore_cf_iterate()
  • np_()
  • rho()
  • tp_()
• SecTheory.Sepsey2014b
• SecTheory.SepseyProof
  • fitting_demo_impl()
  • fitting_demo_lognormal_pore_cf()
• SecTheory.ShapeRgFigure
  • compute_Rg()
  • compute_weights()
  • plot_ellipsoid()
  • plot_ellipsoid_rg_ratio()
• SecTheory.SinglePoreNonCf
  • SinglePoreSolver
    • SinglePoreSolver.objective_function()
    • SinglePoreSolver.optimize()
    • SinglePoreSolver.split_params()
  • fit_single_pore_pdf()
  • single_pore_pdf()
• SecTheory.StochasticModels
  • demo()
  • stochastic()
• SecTheory.StochasticSolver
  • CfDomain
    • CfDomain.fit()
    • CfDomain.fit_impl()
    • CfDomain.get_spline()
• SecTheory.T0UpperBound
  • estimate_t0upper_bound()
• SecTheory.TriporeExclCurve
  • compute_confpoints_impl()
  • compute_excurve_impl()
  • create_spline()
  • demo()
  • estimate_tripore_exclcurve()
• SecTheory.TriporeSecSimulation
  • demo()
• SecTheory.TriporeSimulation
  • demo()
• SecTheory.compare_grm_to_emg