LowRank

LowRank.__init__.py

Submodules

• LowRank.AlignDecompositions
  • get_P_at()
  • align_decompositions()
• LowRank.BoundedLrf
  • estimate_KL()
  • coerce_bounds()
  • apply_bounded_lrf()
• LowRank.Component
  • Component
    • Component.icurve_array
    • Component.jcurve_array
    • Component.ccurve
    • Component.peak_index
    • Component.icurve
    • Component.jcurve
    • Component.area
    • Component.ccurve
    • Component.get_icurve()
    • Component.get_jcurve()
    • Component.get_jcurve_array()
    • Component.compute_area()
    • Component.compute_range()
    • Component.make_paired_range()
  • XrComponent
    • XrComponent.sg
    • XrComponent.get_guinier_object()
    • XrComponent.compute_rg()
    • XrComponent.plot_guinier()
    • XrComponent.inspect_guinier()
  • UvComponent
• LowRank.ComponentCurve
  • ComponentCurve
    • ComponentCurve.x
    • ComponentCurve.params
    • ComponentCurve.moment
    • ComponentCurve.y
    • ComponentCurve.get_y()
    • ComponentCurve.get_xy()
    • ComponentCurve.get_moment()
    • ComponentCurve.get_params()
    • ComponentCurve.get_peak_top_x()
    • ComponentCurve.get_scale_param()
• LowRank.ComponentReliability
  • component_quality_scores()
  • is_component_reliable()
• LowRank.ConsistentAdjuster
  • adjust_components_consistently()
• LowRank.CoupledAdjuster
  • make_component_curves()
  • select_components()
• LowRank.CurveDecomposer
  • safe_log10()
  • compute_areas()
  • CurveDecomposer
  • decompose_icurve_impl()
• LowRank.Decomposition
  • Decomposition
    • Decomposition.ssd
    • Decomposition.xr
    • Decomposition.xr_icurve
    • Decomposition.xr_ccurves
    • Decomposition.xr_ranks
    • Decomposition.uv
    • Decomposition.uv_icurve
    • Decomposition.uv_ccurves
    • Decomposition.uv_ranks
    • Decomposition.mapping
    • Decomposition.mapped_curve
    • Decomposition.paired_ranges
    • Decomposition.num_components
    • Decomposition.copy_with_new_components()
    • Decomposition.xr_components
    • Decomposition.uv_components
    • Decomposition.get_num_components()
    • Decomposition.get_guinier_objects()
    • Decomposition.get_rgs()
    • Decomposition.get_rg_curve()
    • Decomposition.get_P_at()
    • Decomposition.component_quality_scores()
    • Decomposition.is_component_reliable()
    • Decomposition.plot_components()
    • Decomposition.update_xr_ranks()
    • Decomposition.get_xr_matrices()
    • Decomposition.get_xr_components()
    • Decomposition.get_uv_matrices()
    • Decomposition.get_uv_components()
    • Decomposition.get_pairedranges()
    • Decomposition.get_proportions()
    • Decomposition.compute_scds()
    • Decomposition.get_cd_color_info()
    • Decomposition.optimize_with_model()
    • Decomposition.make_rigorous_initparams()
    • Decomposition.optimize_rigorously()
• LowRank.ErrorPropagate
  • compute_propagated_error()
• LowRank.LowRankInfo
  • get_denoised_data()
  • compute_lowrank_matrices()
• LowRank.PairedRange
  • PairedRange
    • PairedRange.ranges
    • PairedRange.peak_index
    • PairedRange.elm_recs
    • PairedRange.get_fromto_list()
    • PairedRange.as_list()
    • PairedRange.is_minor()
  • convert_to_list_pairedranges()
• LowRank.PositionedDecomposer
  • decompose_icurve_positioned()
• LowRank.ProportionalDecomposer
  • compute_egh_area_fast()
  • decompose_icurve_proportionally()
• LowRank.QuickImplement
  • make_decomposition_impl()
  • make_component_curves_with_proportions()
  • make_component_curves_with_positions()