Global.Options

Global.Options#

Global.Options.py

set_molass_options(**kwargs)#

Set global options for molass.

Parameters:

  • mapped_trimming (bool, optional) – Whether to perform mapped trimming. Default is True. See molass.Trimming.TrimmingUtils.make_mapped_trimming_info() for details.

  • flowchange (bool or str, optional) –

    Whether to consider flow change. Default is False. If a string is given and equal to ‘auto’, flow change will be considered according to the beamline info of input data as follows.

    • If the beamline name starts with “PF”, flow change will be considered.

    • Otherwise, flow change will not be considered.

  • developer_mode (bool, optional) – Whether to enable developer mode. Default is False.

  • elution_recognition (str, optional) – Which elution curve to use for peak detection and buffer-frame classification. Default is 'icurve' (single row at q≈0.02, current behaviour). Set to 'sum' to use the sum over all (trimmed) q-rows, which is more robust when baseline drift is q-dependent (e.g. MY-type datasets).

  • kwargs (dict) – Other options to set.

get_molass_options(*args)#

Get global options for molass.

Parameters:

args (str) –

The names of the options to get. The options are:

  • ’mapped_trimming’: Whether to perform mapped trimming.

  • ’flowchange’: Whether to consider flow change.

  • ’developer_mode’: Whether to enable developer mode.

  • ’elution_recognition’: Which elution curve to use for recognition ('icurve' or 'sum').

Returns:

The values of the requested options.

Return type:

dict

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