FlowChange.FlowChangeLikely

Baseline.FlowChangeLikely.py

compute_yscale(x, y)

Compute the y-scale for likelihood computation.

Parameters:

• x (array-like) – The x-values of the curve.

• y (array-like) – The y-values of the curve.

Returns:

The y-scale value.

Return type:

float

get_safeslice(lb, ub, start, stop)

Get a safe slice within the bounds [lb, ub).

Parameters:

• lb (int) – The lower bound (inclusive).

• ub (int) – The upper bound (exclusive).

• start (int) – The start index of the slice.

• stop (int) – The stop index of the slice.

Returns:

The safe slice object.

Return type:

slice

find_nearest_point(px, py, i, x, y, yscale)

Find the nearest point to (px, py) around index i.

Parameters:

• px (float) – The x-coordinate of the point.

• py (float) – The y-coordinate of the point.

• i (int) – The index around which to search.

• x (array-like) – The x-values of the curve.

• y (array-like) – The y-values of the curve.

• yscale (float) – The y-scale for distance computation.

Returns:

The index of the nearest point.

Return type:

int

compute_flowchange_likelihoods(x, y, points, segments, yscale=None, return_neighbours=False)

Compute the flow change likelihoods at the given points.

Parameters:

• x (array-like) – The x-values of the curve.

• y (array-like) – The y-values of the curve.

• points (list of int) – The breakpoints of the segments.

• segments (list of Linesegment) – The list of line segments.

• yscale (float, optional) – The y-scale for likelihood computation. If None, it will be computed from the data.

• return_neighbours (bool, optional) – If True, also return the neighbouring point indices for each breakpoint. Defaults to False.

Returns:

• likelihoods (array-like) – The normalized likelihoods for each breakpoint.

• neighbours (list of tuples, optional) – If return_neighbours is True, a list of (j, k) tuples where j and k are the indices of the nearest points on either side of each breakpoint.

flowchange_likelihood(x, y, i, seg1, seg2, yscale, neighbours=None, debug=False)

Compute the flow change likelihood at the given index.

Parameters:

• x (array-like) – The x-values of the curve.

• y (array-like) – The y-values of the curve.

• i (int) – The index of the breakpoint.

• seg1 (Linesegment) – The segment before the breakpoint.

• seg2 (Linesegment) – The segment after the breakpoint.

• yscale (float) – The y-scale for likelihood computation.

• neighbours (list of tuples, optional) – If provided, the function will append the (j, k) indices of the nearest points on either side of the breakpoint to this list.

• debug (bool, optional) – If True, print debug information.

Returns:

The likelihood value for the breakpoint.

Return type:

float