In terms of general philosophy, our approach can be roughly classified as elution modeling. Let us briefly discuss this classification to clarify our position in the broader context.
Modeling vs. Model-Free Approaches¶
There exist some model-free approaches, such as REGALS Meisburger et al. (2021) and EFAMIX Konarev et al. (2022), which are based on the idea of “Evolving Factor Analysis” Maeder & Zuberbuehler (1986).
In this contrast, our approach is classified as modeling.
Elution modeling vs. Spectrum modeling¶
From the matrix inversion discussion in the previous chapter, we can consider two possibilities. In other words, from the factorization , both factors and are equally eligible for modeling from a matehmatical point of view.
If that is the case, why do we choose to model (elution modeling) not (spectrum modeling)?
Roughly speaking, this is because spectral models are mostly shape-specific (or shape-dependent)[1], e.g. see Pedersen (1997). Therefore, you have to choose the shape to use a spectral model, which is not appropriate when the particle shape is unknown.
On the other hand, elution models are rather size-dependent (if at all)[2], which is also in line with SEC—Size Exclusion Chromatography.
In this sense, Guinier-Porod model is an exception. However, it is known to be unrealistic from our experience at least for proteins.
Also note that the size can be parametrized, which is impossible for the shape.
- Meisburger, S. P., Xu, D., & Ando, N. (2021). REGALS: a general method to deconvolve X-ray scattering data from evolving mixtures. IUCrJ, 8(2), 225–237. 10.1107/S2052252521000555
- Konarev, P. V., Graewert, M. A., Jeffries, C. M., Fukuda, M., Cheremnykh, T. A., Volkov, V. V., & Svergun, D. I. (2022). EFAMIX, a tool to decompose inline chromatography SAXS data from partially overlapping components. Protein Sci., 31(1), 269–282.
- Maeder, M., & Zuberbuehler, A. D. (1986). The resolution of overlapping chromatographic peaks by evolving factor analysis. Analytica Chimica Acta, 181, 287–291. https://doi.org/10.1016/S0003-2670(00)85248-4
- Pedersen, J. S. (1997). Analysis of small-angle scattering data from colloids and polymer solutions: modeling and least-squares fitting. Advances in Colloid and Interface Science, 70, 171–210. https://doi.org/10.1016/S0001-8686(97)00312-6